Viral Infections in BAL and Bronchial Biopsies of Stable COPD Patients

Patients and control subjects The population of the study consisted of consecutive patients with stable COPD and control subjects, who were referred to the investigators between October 2012 and November 2014 in order to undergo fibreoptic bronchoscopy for diagnostic (e.g., lung cancer) or therapeutic (e.g., hemoptysis) purposes. At study time, the clinical and functional status of COPD patients had been stable for at least 4 weeks, and none had received antibiotic treatment during the last 4 weeks. Exclusion criteria included atopic history, asthma, extensive pleural effusions, bronchiectasis, immunosuppression due to chemotherapy or systemic corticosteroids and all the contraindications of the bronchoscopic procedures. COPD severity was classified using postbronchodilator spirometric values according to the Global Initiative for Chronic Obstructive Lung Disease (GOLD) guidelines. Also, the patients were evaluated according to the combined COPD assessment. In this classification the impact of the disease on an individual patient is determined from the combination of the symptomatic assessment (CAT or mMRC scores), the patient's spirometric classification and/or the risk of exacerbations (number of exacerbations and history of hospitalization due to exacerbation in the preceding year).The control group was consisted of non-smokers or current/ex-smokers without COPD. The ex-smoking condition was defined as the cessation of smoking habit at least 1 year previously.

All the participants completed a questionnaire which included demographic characteristics and cigarette smoking status (pack/year). Τhe clinical status was evaluated according to the modified Medical Research Council (mMRC) scale of breathlessness and the Body mass , airflow Obstruction, Dyspnea, Exercise (BODE) index. Pulmonary function testing was performed and arterial blood gases and blood oxygen saturation by pulse oximetry in the sitting position were measured. Patients were asked about the number and the characteristics of the preceding exacerbations, the number and duration of preceding hospitalizations for respiratory disorders, their past medical history (asthma, allergy, sinusitis or nasal polyps), the presence of comorbidities (heart disease, malignancies, e.t.c.), and all the medication they used.

Both the COPD patients and control subjects were appropriately prepared (local anesthesia and intravenous sedation) in order to undergo transnasal fibreoptic bronchoscopy. After the routine bronchoscopic inspection of the tracheobronchial tree, the investigators performed BAL from subsegmental bronchi and bronchial biopsies (3-4 per patient) from non infiltrated carina.

All the samples were aliquoted, frozen and stored within 1 hour after sampling. HRV and RSV detection RNA samples were extracted from BAL and lung biopsies using the Maxwell 16 viral total nucleic acid (Promega). A Nucleocapsid (N) gene partial sequence, as well as a 5΄ non-coding region (5΄NCR) partial sequence were amplified for RSV and HRV, respectively.

Real-time PCR studies were performed. The primers/probes mix, that were used, have broad homology with a large range of HRV serotypes. Also, the primers/probes for RSV are able to distinguish RSV subtypes A and B whilst excluding the closely related human Metapneumoviruses. The primer and probe mix provided exploited the so-called TaqMan principle. A fluorogenic probe was included in the same reaction mixture which consisted of a DNA probe labeled with a 5'-dye and a 3'-quencher. Besides this, the probe was cleaved and the reporter dye and quencher were separated. The resulting increase in fluorescence could be detected on a range of real-time PCR platforms. Each time the kits were used, a positive and a negative control reaction were included in the run.