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Pregnancy RelatedMMIPNCT04992104

Microbiome and Malnutrition in Pregnancy

An observational study of Pregnancy Related and Pregnancy Loss, run by The Hospital for Sick Children at 2 sites in Canada.

Active, not recruiting

Under way, not looking for participants. Everyone needed has enrolled. The study is still running.

Official record
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Trial summary

This study is being conducted to investigate how a mother's nutritional status and her gut microbiome during pregnancy contribute to the birth outcomes and health of her baby. The gut microbiome is the totality of microorganisms (e.g. bacteria, viruses, fungi) living in the gastrointestinal tract. Read more about this study

Who is it for?
Ages Up to 28 years, women only
How many people
800 participants
Where
2 sitesCanada
Study dates
22 Feb 2023to Mar 2027
Phase
Observational
Are there results?
Not yet: the study is under way

Key requirements

Who can take part, as listed by the sponsor. Only the study team can confirm whether you are eligible, so take this list to your doctor.

  • Ages Up to 28 years
  • Women only
  • No healthy volunteers
  • Child, Adult

Study population: The study population will consist of pregnant women, 28 years of age and younger, living in the Toronto and Greater Toronto Area. The investigators focus on younger women, due to the lack of knowledge about their microbiome and their vulnerability to undernutrition

Who may be able to join

  • Consent provided
  • Participant is between 8-20 weeks post-conception
  • Female aged 28 years of age and younger
  • Confirmation of pregnancy
  • Intend to comply with study procedures and follow up

Who cannot join

  • Women who do not meet the enrolment age criteria
  • Women who are 20 + weeks post-conception
  • Women who have taken antibiotics within the past 3 months Note: it is common practice to give the mother penicillin in perinatal period if they are GBS positive; because this is standardized across the board it would not act as an exclusion factor.

Trial locations and contacts

2 sites in 1 country.

Canada2 sites
  • St. Michael's Hospital

    Toronto

  • The Hospital for Sick Children

    Toronto

Other trials in Canada

About this study

Official title: Elucidating the Dynamics and Impact of the Gut Microbiome on Maternal Nutritional Status During Pregnancy

This study is being conducted to investigate how a mother's nutritional status and her gut microbiome during pregnancy contribute to the birth outcomes and health of her baby. The gut microbiome is the totality of microorganisms (e.g. bacteria, viruses, fungi) living in the gastrointestinal tract. This study will focus on pregnant women, 28 years and younger living in the Toronto and greater Toronto area. The focus is on younger women due to their vulnerability to undernutrition. Pregnant participants, and upon delivery, their newborns will be followed throughout pregnancy and for a year afterwards. Throughout this period, the investigators will collect stool samples, rectal swabs, blood samples, health assessments, nutritional and dietary assessments and birth/ labour details. The goal is to define the relationship between a mother's nutritional status and her microbiome dynamics during pregnancy and how they contribute to the birth outcomes and growth of her newborn. With the hypothesis that alterations of the microbiota in the maternal gut (dysbiosis) exacerbated by nutritional status or pathogen exposure during pregnancy, impacts weight gain because of impaired nutrient absorption, leading to corresponding negative birth outcomes.

Read the detailed description

This project represents the first systematic investigation of the impact of the microbiome on nutritional status during pregnancy in young women and directly aligns with global health initiatives focused on this vulnerable cohort. The goal of the study is to define the relationships between host nutritional status and microbiome dynamics during pregnancy and how they contribute to birth outcomes. The gut microbiome has a profound influence on host nutritional status. Dysbiosis (loss of diversity/beneficial microbes and gain of pathobionts) has emerged as a major factor in the development of undernutrition. Despite the importance of nutrition during pregnancy, few studies have examined the role of the microbiome on maternal health and birth outcomes. Further, little is known concerning the influence of enteric eukaryotic microbes, such as parasites, on the bacterial microbiome and host nutrition.

At the core of this study are two complementary cohorts of young women that provide an exceptional opportunity to obtain longitudinal samples to monitor the dynamic relationships between microbiome community structure and function with gut health and host nutritional status. This registration is for the the Toronto cohort of the study, which will focus on refugee and young adult obstetric clinics in Toronto, a population of specific relevance to undernutrition. This cohort is expected to yield insights into the influence of eukaryotic microbes that are often viewed as asymptomatic. The target demographic of the study is young mothers, 28 years of age and younger, in the Toronto and Greater Toronto Area. The investigators have identified this younger demographic due to the lack of knowledge on the microbiome of young women, and their vulnerability to undernutrition. A second complementary cohort will be based in the Matiari district of Pakistan. This project will yield unprecedented insights into the relationships between prokaryotic and eukaryotic microbes in the gut and their associations with maternal health and birth outcomes.

The central hypothesis of the study is that alterations of the microbiota in the maternal gut (dysbiosis) exacerbated by nutritional status or pathogen exposure during pregnancy, impacts weight gain because of impaired nutrient absorption, leading to corresponding negative birth outcomes.

The study will be a prospective, longitudinal, observational study to investigate the impact and relationship between prokaryotic and eukaryotic microbes in the gut and their association with maternal health and birth outcomes among young women, 28 years of age and younger in the Toronto and Greater Toronto Area. The study will aim to recruit 400 women into two groups based on BMI at time of recruitment (Normal BMI will be defined as between 20 and 24.9 kg/m2 and Low BMI will be defined as less than 20 kg/m2). With a goal of having 200 participants within the normal BMI group and 200 participants within the low BMI group. Although this is the recruitment aim, in the event that the investigators are unable to recruit 200 women with a low BMI, more women will be recruited that fall within the normal BMI range. The study will follow women and their infants over the course of their pregnancy and for a year post-partum, collecting stool, rectal and blood samples, nutritional information, heath assessments, anthropometric measurements and empowerment metrics at different time points.

Medical subject headings
Pregnancy Complications, Parasitic Diseases, Communicable Diseases, Malnutrition, Infant Nutrition Disorders, Breast Feeding

What is being measured

The primary outcome is the main question the study is designed to answer.

  1. To assess if alterations of the microbiota in the maternal gut (dysbiosis) are associated with changes in maternal gestational weight gain.

    The primary endpoint will be the change in maternal gestational weight gain (GWG) during pregnancy, measured between the first (8-20 weeks post-conception) and second time point (30-34 weeks post conception).

    Measured: 8-20 weeks post-conception, 30-34 weeks post conception

Secondary outcomes (54)
  1. Anthropometrics: Maternal BMI

    calculated using weight and height; BMI = kg/m2

    Measured: 8-20 weeks post-conception, 30-34 weeks post-conception, delivery, 3-months post-partum, 6 months post-partum and 12 months post-partum

  2. Anthropometrics: Maternal middle upper arm circumference

    Measured in cm

    Measured: 8-20 weeks post-conception, 30-34 weeks post-conception, 3-months post-partum,and 12 months post-partum

  3. Anthropometrics: Maternal triceps skinfold thickness

    Measured in cm

    Measured: 8-20 weeks post-conception, 30-34 weeks post-conception, 3-months post-partum, and 12 months post-partum

  4. Anthropometrics: Maternal height

    Measured in cm

    Measured: 8-20 weeks post conception, 30-34 weeks post conception, delivery, 3 months post-partum and 12 months post partum

  5. Anthropometrics: Maternal weight

    Measured in kg

    Measured: 8-20 weeks post conception, 30-34 weeks post conception, delivery, 3 months post-partum and 12 months post-partum

  6. Maternal blood biomarkers

    Concentration of HB + MCV, ferritin, and CRP

    Measured: 8-20 weeks post-conception, 30-34 weeks post-conception, and 12 months post-partum

  7. Infant blood biomarkers

    Concentration of HB + MCV, ferritin, and CRP

    Measured: 12 months

  8. Infant sex

    Female or Male

    Measured: Determined at delivery

  9. Infant morbidity

    Assessed through infant health assessment questionnaires

    Measured: 3 months, 6 months and 12 months

  10. Maternal morbidity

    Assessed through health assessment questionnaires

    Measured: 8-20 weeks post-conception, 30-34 weeks post-conception, 3 months post-partum, 6 months post-partum and 12 months post-partum

  11. Infant growth: weight

    Measured in kg

    Measured: within 24 hours of birth, 3 months, 6 months and 12 months

  12. Infant growth: length

    Measured in cm

    Measured: within 24 hours of birth, 3 months, 6 months and 12 months

  13. Infant growth: head circumference

    Measured in cm

    Measured: within 24 hours of birth, 3 months, 6 months and 12 months

  14. Infant growth: mid upper arm circumference

    Measured in cm

    Measured: within 24 hours of birth, 3 months, 6 months and 12 months

  15. Infant growth: triceps skinfold thickness

    Measured in cm

    Measured: within 24 hours of birth, 3 months, 6 months and 12 months

  16. Infant Gestational age

    Will be documented at baseline visit.

    Measured: 8-20 weeks post conception

  17. Breast feeding: amount and initiation of complementary feeding

    Based off of WHO 2010 Guidelines: Indicators for assessing infant and young child feeding practices (Part 2 Measurement)

    Measured: within 24 hours of birth, 3 months, 6 months and 12 months

  18. Maternal age

    28 years or younger

    Measured: Documented at 8-20 weeks post-conception

  19. Reported maternal medication use

    [Questionnaire]

    Measured: 8-20 weeks post-conception, 30-34 weeks post-conception, within 24 hours of delivery, 3-months post-partum, 6 months post-partum and 12 months post-partum

  20. Reported Infant medication use

    [Questionnaire]

    Measured: within 24 hours of birth, 3 months, 6 months and 12 months

  21. Maternal dietary intake

    Assessed through ASA 24 HR Dietary Recall system, completed 2x each time point

    Measured: 8-20 weeks post conception, 30-34 weeks post conception and 12 months post partum

  22. Dietary diversity

    Minimum Dietary Diversity Score for Women (MDD-W)

    Measured: 8-20 weeks post conception, 30-34 weeks post conception, 3 months post-partum and 12 months post partum

  23. Household annual food insecurity

    Food insecurity will be assessed using the Household Food Insecurity Access Scale (HFIAS)

    Measured: 3 months post-partum and 12 months post-partum

  24. Self-efficacy

    Self-efficacy will be measured using the Generalized Self-Efficacy scale, developed by Schwarzer and Jerusalem

    Measured: 3 months post-partum and 12 months post partum

  25. Perceived decision making

    Questions pertaining to perceived decision-making are from the Pakistan Demographic and Health Survey (PDHS)

    Measured: 3 months post-partum and 12 months post partum

  26. Perceived social support

    Perceived social support will be measured using the Multi-dimensional Scale of Perceived Social Support (MSPSS), developed by Zimet et al.

    Measured: 3 months post-partum and 12 months post partum

  27. Maternal demographics

    Questions pertaining to demographic data are adapted from the Pakistan Demographic and Health Survey (PDHS)

    Measured: 8-20 weeks post-conception

  28. Food insecurity

    Questionnaire developed by Hager, E.R., et al., Development and validity of a 2-item screen to identify families at risk for food insecurity.

    Measured: 8-20 weeks post conception, 3 months post partum and 12 months post partum

  29. Perceived parental stress

    Perceived parental stress will be measured using the Perceived Stress Scale (PSS-10)

    Measured: 3 months post-partum and 12 months post partum

  30. Preterm birth

    noted in labor and birth chart review

    Measured: Within 24 hours of birth

  31. Stillbirth

    noted in labor and birth chart review

    Measured: Within 24 hours of birth

  32. Small for gestational age

    noted in labor and birth chart review

    Measured: Within 24 hours of birth

  33. Large for gestational age

    noted in labor and birth chart review

    Measured: Within 24 hours of birth

  34. Birth size: length

    Measured in cm

    Measured: within 24 hours of birth

  35. Birth size: head circumference

    Measured in cm

    Measured: within 24 hours of birth

  36. Birth size: weight

    Measured in kg

    Measured: within 24 hours of birth

  37. Birth defects

    Assessed within 24 hours of birth

    Measured: within 24 hours of birth

  38. Delivery assessment

    Assessed within 24 hours of birth

    Measured: within 24 hours of birth

  39. Infant dietary intake: NutricheQ Questionnaire

    NutricheQ questionnaire: a tool designed for toddlers aged 1 to 3 years of age, with a focus on markers for inadequate or excessive intake and dietary imbalances

    Measured: 12 months

  40. Maternal stool biomarkers: Calprotectin, Lipocalin and Claudin 15

    Markers in the stool for intestinal mass, inflammation, and gut permeability and circulating lipopolysaccharide, among other markers

    Measured: 8-20 weeks post conception, 30-34 weeks post conception, 3 months post partum and 12 months post partum

  41. Infant Stool biomarkers: Calprotectin, Lipocalin and Claudin 15

    Markers in the stool for intestinal mass, inflammation, and gut permeability and circulating lipopolysaccharide, among other markers

    Measured: 3 months and 12 months

  42. Maternal: incidence of pathobionts

    As identified through 16S, 18S and ITS rDNA surveys

    Measured: 8-20 weeks post conception, 30-34 weeks post conception, 3 months post partum and 12 months post partum

  43. Infant: incidence of pathobionts

    As identified through 16S, 18S and ITS rDNA surveys

    Measured: 3 months and 12 months

  44. Maternal: metabolomic profile of stool (metabolites involved in central metabolism as analysed by Mass Spectrometry)

    Analysis of the core metabolites involved in central metabolism. These metabolites will be analysed through Mass Spec and include short chain fatty acids, amino acids, intermediates in energy metabolism and nucleotide biosynthesis

    Measured: 8-20 weeks post conception, 30-34 weeks post conception, 3 months post partum and 12 months post partum

  45. Maternal gut bacteria profile as measured through 16S rDNA sequence surveys

    measured through 16S rDNA sequence surveys

    Measured: 8-20 weeks post conception, 30-34 weeks post conception, 3 months post partum and 12 months post partum

  46. Maternal: blood metallomics profile as measured through ICP-MS (https://www.metabolomicscentre.ca/new_service/25)

    TMIC Metallomics Platform to be used.

    Measured: 8-20 weeks post conception, 30-34 weeks post conception, and 12 months post partum

  47. Infant: blood metallomics profile as measured through ICP-MS (https://www.metabolomicscentre.ca/new_service/25)

    Through TMIC platform

    Measured: 12 months

  48. Infant: gut bacterial profile as measured through 16S rDNA sequence surveys

    measured through 16S rDNA sequence surveys

    Measured: 3 and 12 months post partum

  49. Maternal metabolic pathway expression profile as measured through whole microbiome RNASeq (metatranscriptomics)

    measured through whole microbiome RNASeq (metatranscriptomics)

    Measured: 8-20 weeks post conception, 30-34 weeks post conception, 3 months post partum and 12 months post partum

  50. Infant eukaryotic microbiome profile as measured through 18S and ITS rDNA sequence surveys

    measured through 18S and ITS rDNA sequence surveys

    Measured: 3 months and 12 months

  51. Maternal eukaryotic microbiome profile as measured through 18S and ITS rDNA sequence surveys

    measured through 18S and ITS rDNA sequence surveys

    Measured: 8-20 weeks post conception, 30-34 weeks post conception, 3 months post partum and 12 months post partum

  52. Maternal bacterial gene expression profile as measured through whole microbiome RNASeq (metatranscriptomics)

    The output of these analyses are readouts of microbial gene expression detailing biochemical activities as well as the taxa responsible.

    Measured: 8-20 weeks post conception, 30-34 weeks post conception, 3 months post partum and 12 months post partum

  53. Maternal: microbiome taxonomic alpha and beta diversity

    To define taxonomic diversity, species profiles from 16S, 18S and ITS rDNA data will be clustered to identify differences in community structure across samples. Alpha diversity will be measured through indices such as Chao, Shannon and Simpson indices. Beta diversity will be measured through standard indices such as Bray-Curtis distances.

    Measured: 8-20 weeks post conception, 30-34 weeks post conception, 3 months post partum and 12 months post partum

  54. Infant: microbiome taxonomic alpha and beta diversity

    To define taxonomic diversity, species profiles from 16S, 18S and ITS rDNA data will be clustered to identify differences in community structure across samples. Alpha diversity will be measured through indices such as Chao, Shannon and Simpson indices. Beta diversity will be measured through standard indices such as Bray-Curtis distances.

    Measured: 3 months and 12 months

Timeline

From the start of the study to its completion; the mark is today. Estimated dates are the sponsor’s plan.

  1. First posted5 Aug 2021
  2. Study start22 Feb 2023
  3. Primary completionMar 2027 (estimated)
  4. Study completionMar 2027 (estimated)

Resources

More details

For doctors and researchers: how the study is designed, who runs it, and its registry IDs.

Study design
Study type
Observational
Observational model
Cohort
Time perspective
Prospective
Enrolment
800 participants (estimated)
IDs, dates and publications
ClinicalTrials.gov ID
NCT04992104
Sponsor's protocol ID
CTOREB3512
Other IDs
MRT-168043
Acronym
MMIP
Status last verified
Apr 2026
First submitted
16 Jun 2021
Last updated
28 Apr 2026
Results posted
No
Data monitoring committee
No
FDA-regulated drug
No
FDA-regulated device
No
Individual data sharing
Yes: In addition to publishing findings in open access journals, the investigators will ensure all sequences and metabolomics datasets are deposited in appropriate public repositories. SOPs, pathogen samples and statistical methods developed through this project will be shared with the IMPACTT research core (https://www.impactt-microbiome.ca/). Microbiome sequence data will be uploaded on the National Centre for Biotechnology Information (NCBI). The NCBI acts as a central data repository for sequence data. In line with publication standards, the investigators are required to provide access to users who may wish to follow up on analyzing the microbiome data for their own purposes. The sample analysis information, including the sequencing data and metabolomics data will be de-identified and the patient sequence data will be removed.

Questions about this trial

What is this clinical trial studying?

An observational study of Pregnancy Related and Pregnancy Loss, run by The Hospital for Sick Children at 2 sites in Canada.

The full registered description is in the About this study section and the official record.

Who may be eligible to take part?

The sponsor lists 5 inclusion and 3 exclusion criteria. Eligibility is decided by the study team after screening, so read the full criteria and contact a listed site.

Is this clinical trial currently recruiting?

The record says: under way, not looking for participants, as of the sponsor's last update on 28 Apr 2026. Status can change between updates, so confirm with the study contact before making plans.

Where is the study taking place?

The record lists 2 sites in Canada. Whether a site is taking part right now should be confirmed with that site. See every site.

What are the possible benefits and risks?

They depend on the study and the treatment, and no study can promise a benefit. The study team explains the known risks during informed consent, before anyone joins; the record itself does not list them.

Are results available for this study?

This study is still under way. Results are not available in the source record yet.

How can a doctor refer a patient or contact the research team?

The record lists no contact. The official record names the sponsor, who can be asked directly. AzTrials does not enrol participants or take referrals.

What does the primary outcome measure?

To assess if alterations of the microbiota in the maternal gut (dysbiosis) are associated with changes in maternal gestational weight gain. (time frame: 8-20 weeks post-conception, 30-34 weeks post conception). It is what the study was designed to measure, not a finding.

Where can I read the original study information?
Does a listing mean the treatment is approved or proven to work?

No. A listing means the study is registered. It does not show that the treatment is safe, works, or is approved by a regulator.

How often is this information updated?

AzTrials copies changed records from ClinicalTrials.gov every night and reloads the whole registry every week. The sponsor last updated this record on 28 Apr 2026.

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