Clinical and Molecular Correlates of Response to First Line Treatment in Lichen Planus

PARTICIPANT SELECTION AND ENROLMENT

IDENTIFYING PARTICIPANTS All participants will be selected from attendants of the Oral \& Maxillofacial Unit, Women's Day Clinic and Aberdeen Dental School in the Foresterhill Campus. The research team will identify eligible participants for the study by screening through review of their electronic records. Caldicott Guardian approval will be sought for Sreedevi P.U to gain direct access to patient clinical records for screening purposes. Patients diagnosed with oral or oral and vulvovaginal lichen planus will be recruited into the study, only following biopsy confirmation. The diagnosis of lichen planus will be made on the basis of accepted clinical and histopathological findings, to meet the eligibility criteria, patients must be undergoing topical steroid therapy as a part of their management plan for lichen planus.

SCREENING FOR ELIGIBILITY Patients attending routine clinics will be screened for eligibility through review of their electronic records. Here, we emphasise that no study data will be recorded from participant's medical/dental records, until we have a written informed consent from them. Eligibility of patients will be checked for predefined inclusion/exclusion criteria by reviewing clinical and histopathological records of patients that have been diagnosed with lichen planus by the clinical research team.

CONSENTING PARTICIPANTS

Potentially eligible patients will be contacted through a research study information pack sent by post. The research study information pack will include: an invitation letter, a Patient Information Sheet (PIS), a return slip and pre-paid envelope for the patient to notify the research team of whether or not they wish to participate. If the patient is interested in taking part, they will be contacted by telephone by the research team to arrange a visit at a dedicated research study session. At this point, written informed consent will be obtained from potentially eligible patients after having a verbal discussion about the nature of the study and answering any questions the patient may have. Informed consent from patients with oral lichen planus will be obtained by Dr Sreedevi P.U and the research nurse named in this application will be involved in obtaining consent from patients with vulvovaginal disease. Patients will be consented for the following aspects:

1. Review of their medical and dental records
2. Analysis of the histological records associated with the lichen planus diagnosis
3. Provision of additional information relating to host factors potentially to lichen planus progression if not already available in the patient records.
4. Filling questionnaire related to stress levels.
5. Intraoral examination
6. Sample collection (blood, saliva, swabs)
7. Vulvovaginal examination and sampling (where relevant)
8. Follow-up post-treatment appointment.
9. Storage and use of their samples for ethically reviewed and approved future studies.
10. To be contacted by the study team for future ethically approved studies.

STUDY ASSESSMENTS

The following clinical information will be recorded for all patients if not already available through the patient's medical/dental records:

1. Dental/Medical History include past and current dental and medical conditions.
2. Social History include smoking status, alcohol consumption and stress levels. The 10-item Perceived Stress Scale (PSS-10) will be used to assess perceived stress level in the patients with lichen planus. It is a self-report scale which measures the degree to which situations over the last month in the respondent's life are appraised as unpredictable, uncontrollable and overloading.
3. Assessment of Oral Health Patients recruited for the study will undergo a partial assessment of oral health aimed at recording the following information:

• Oral hygiene status To be assessed by performing Simplified Oral Hygiene Index (OHI-S) which has two components, the Debris Index-Simplified (DI-S) and the Calculus Index-Simplified (CI-S).
• Basic periodontal examination A basic periodontal examination is a routine screening investigation carried out to assess periodontal health. It involves probing of the periodontal tissues to assess the presence of bleeding on probing, plaque and calculus deposits and the depth of any periodontal pockets which may be present. Basic periodontal examination will be conducted in accordance with the guidelines of the British Society of Periodontology.
• Disease severity score of Lichen Planus It will be scored based on site of involvement, disease activity and pain using the best scoring system identified by conducting a systematic review.
• Detail of prescribed topical steroid regime for lichen planus: type of corticosteroid, formulation, frequency of application, duration of treatment.

1. Vulvovaginal Examination Patients diagnosed with vulvo-vaginal lichen planus will undergo a vulval examination to formally score disease severity. A speculum examination will be performed to assess disease severity for those women with vaginal disease and to collect swab of vaginal secretions.
2. COLLECTION OF SAMPLES Samples (saliva, blood, oral swabs and vaginal sampling (where applicable) will be collected from the patient's who have started their topical steroid treatment, aimed at microbiome and immune markers analyses. Participants will need to undergo a second sampling after the completion of topical steroid treatment approximately two months after their first visit.

Saliva: For this study, we will collect two unstimulated whole saliva fasting samples, one sample for the study of inflammatory/immune factors, another sample for the microbiome studies. To reduce the number of variables that may interfere with composition of the microbial populations colonising the oral tissues, eligible patients will be asked not to use antibacterial mouthwashes for 48 hours prior to the visit. Patients will also be asked to preferably attend morning clinics so that samples can be collected before participants eat the breakfast.

Oral swabs: Two oral swabs (one from affected tissue, one from adjacent healthy tissue). Patients will be advised not to use antibacterial mouthwashes for 48 hours prior to the oral swabs. They will also be asked to attend the morning clinics to reduce the dietary influence on sampling results.

Vulvovaginal sampling: For all patients presenting with vaginal and/or vulval disease we will collect 1 cervico-vaginal lavage sample and up to 3 swabs representative of healthy and diseased areas. Participants will be asked to abstain from sex for 24 hours prior to their appointment.

Bloods: A blood sample (up to 40 ml) will also be collected from patients from whom baseline haematological and biochemical parameters (full blood count, haematinics, random blood glucose, liver function test and Urea \&Electrolytes) are not available. An additional sample will also be collected for analysis of inflammatory markers.

All samples will be transferred to the Institute of Medical Sciences (University of Aberdeen) for microbiome and immune marker analysis.

Histological sections of biopsies conducted as part of routine clinical care will be sourced from the Grampian Biorepository for digital pathology studies.

DATA ANALYSIS Disease response after the completion of topical steroid treatment will be modelled using a linear regression model. The model will adjust for the baseline disease levels (measured using the lichen planus severity score) along with clinical and molecular characteristics and assess the relationship of these predictors with lichen planus severity after treatment. In the event that assumptions for the linear regression model on the observed data are not fulfilled, alternative modelling options such as ordinal regression or logistic regression model will be explored.

Microbial diversity will be assessed by molecular and microbial approaches including but not exclusively next-generation sequencing and multi-locus sequence typing. Analysis of data generated by next-generation sequencing will be carried out at the University of Aberdeen with reference made to the Human Oral Microbiome Database or the CORE database.

Analysis of host responses (including CD4+ helper and CD8+ cytotoxic T cells, their secreted pro-inflammatory and anti-inflammatory cytokine profiles, and any specific autoantibodies) will be carried out mainly by RT-PCR, immunoblotting and flow-cytometry.

Analysis of histopathological images will be aimed at recording the following information:

• Quantification of morphological parameters at the tissue and cellular levels
• Quantification of immune markers such as CD4+Tcells, Foxp3, CD8+T cells, PD-1, PDL-1 and TLRs.

The image processing and analysis will be conducted using the open access image analysis software packages ImageJ and QuPath.