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Irritable Bowel Syndrome (IBS)GenMalCarbNCT05795049

Genetic Carbohydrate Maldigestion as a Model to Study Food Hypersensitivity

An observational study of Irritable Bowel Syndrome (IBS) and Sucrase Isomaltase Deficiency, run by Nottingham University Hospitals NHS Trust at 1 site in United Kingdom.

Active, not recruiting

Under way, not looking for participants. Everyone needed has enrolled. The study is still running.

Official record
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Trial summary

Irritable bowel syndrome (IBS) affects one in seven people with gastrointestinal (GI) symptoms. IBS strongly impacts quality of life, is a leading cause of work absenteeism, and consumes 0.5% of the healthcare annual budget. Read more about this study

Who is it for?
Ages 5 to 70 yearsHealthy volunteers can take part
What is being tested?
Stool and saliva sample collection and Questionnaire completion
How many people
2,000 participants
Where
1 siteUnited Kingdom
Study dates
23 Jul 2024to 31 Mar 2026
Phase
Observational
Are there results?
Not yet: the study is under way

Key requirements

Who can take part, as listed by the sponsor. Only the study team can confirm whether you are eligible, so take this list to your doctor.

  • Ages 5 to 70 years
  • All sexes
  • Healthy volunteers accepted
  • Child, Adult, Older adult

Study population: Multicentre study. IBS patients identified through secondary and tertiary care gastroenterological clinics. Asymptomatic adult controls recruited at the same site as respective patients or, for instance, from transfusion clinics, blood donor centres, bowel cancer screening as long as data on the absence of symptoms is documented.

Who may be able to join

  • Patients age between 5 and 70 years of age.
  • Patients with IBS-D or IBS-M as defined by the Rome III criteria.
  • Previous negative endoscopy with biopsies excluding IBD or microscopic colitis in patients above 50 years old
  • Negative relevant additional screening or consultation whenever appropriate
  • Ability to conform to the study protocol
  • Between 5 and 70 years of age
  • Absence of Rome III IBS criteria

Who cannot join

  • Patients with IBS-C or IBS-U according to Rome III criteria
  • Patients with any condition which, in the opinion of the investigator, makes the patient unsuitable for participation in the study.
  • Patients on opioids
  • Patients with concurrent organic gastrointestinal disease (inflammatory bowel disease, celiac disease, cancer), or a major disease such as diabetes, uncontrolled thyroid disease
  • Patients with a history of bowel surgery (not appendectomy or cholecystectomy)
  • Concurrent major confounding condition, e.g. alcohol or substance abuse in the last 2 years (clinician's judgement).
Show all 10Show fewer
  • Blood relatives of the participating IBS patient are not allowed to participate.
  • Person with any condition which, in the opinion of the investigator, makes them unsuitable for participation in the study.
  • Person presenting with a functional or organic GI disorder.
  • Person presenting with underlying disease that may involve the GI tract (e.g. Parkinson's disease) or be associated with GI symptoms (e.g. anorexia nervosa, major depression).

Trial locations and contacts

1 site in 1 country.

United Kingdom1 site
  • Nottingham University Hospitals NHS Trust

    Nottingham, NG7 2UH

Other trials in United Kingdom

About this study

Official title: Genetic Carbohydrate Maldigestion as a Model to Study Food Hypersensitivity Mechanism and Guide Personalised Treatment Using a Non-invasive Multiparametric Test (Work Package 1)

Irritable bowel syndrome (IBS) affects one in seven people with gastrointestinal (GI) symptoms. IBS strongly impacts quality of life, is a leading cause of work absenteeism, and consumes 0.5% of the healthcare annual budget. It manifests in women more than men with symptoms including abdominal pain, bloating, constipation (IBS-C), diarrhoea (IBS-D), and mixed presentations (IBS-M) (1). The development of therapeutic options is hampered by the poor understanding of the underlying cause of symptoms.

Many patients find that certain foods (particularly carbohydrates) trigger their symptoms, and avoiding such foods has been shown effective in IBS, like in the low-FODMAP (fermentable oligo-, di-, mono-saccharides and polyols) exclusion diet.

This has suggested that the food-symptom relation may involve malabsorption of carbohydrates due to inefficient digestion. However only a percentage of patients respond to this diet. Recently it has been reported that a subset of IBS carries hypomorphic (defective) gene variant of the sucrase isomaltase (SI), the enzyme that normally digests carbohydrates, sucrose and starch. This carbohydrate maldigestion (the breakdown of complex carbohydrates by a person's small bowel enzymes) is characterized by diarrhoea, abdominal pain and bloating, which are also features of IBS. This possibly occurs via accumulation of undigested carbohydrates in the large bowel, where they cause symptoms due to gas production following bacterial fermentation. Similar mechanisms may be acting at the level of other enzymes involved in the digestion, breakdown and absorption of carbohydrates (carb digestion genes -CDGs). Aim of the study is to study the prevalence of this genetic alteration in a large number of IBS patients as compared to asymptomatic controls.

Being tested
Stool and saliva sample collection, Questionnaire completion
Keywords
nutrigenetics, carbohydrates maldigestion
Medical subject headings
Irritable Bowel Syndrome, Sucrase-isomaltase deficiency, congenital

What participants receive

What participants receive. In a randomised study each person is assigned to one group by chance.

  • Stool and saliva sample collectionOther

    Stool and saliva samples collection

  • Questionnaire completionOther

    Questionnaire on;

    • demographic, ethnicity, IBS subtype, post-infection onset, previous surgeries
    • IBS severity score for adults
    • Hospital Anxiety and Depression scores for adults
    • Somatization score for adults
    • Total glucose and fructose and excess fructose, lactose, sorbitol, mannitol, oligosaccharides (Fructans and GOS) as measured by CNAQ questionnaire for adults and children
    • Quality of Life as measured by the PedsQL™ GI Symptoms Module
    • GI symptoms as measured by the PedsQL™ GI Symptoms Module
    • Anxiety, Depression as measured by the Pediatric PROMIS®
Study groups in NCT05795049
Study groupRoleWhat they receive
IBS PatientIBS patient with diarrhoea or alternating bowel habit
Receives: Other: Stool and saliva sample collection; Other: Questionnaire completion
Healthy subjectParticipants without IBS
Receives: Other: Stool and saliva sample collection; Other: Questionnaire completion

What is being measured

The primary outcome is the main question the study is designed to answer.

  1. number of IBS-D and IBS-M with of SI and CDG hypomorphic variants as compared to asymptomatic controls

    the prevalence of SI and CDG hypomorphic variants in IBS-D and IBS-M patients across countries and ethnicities, compared to asymptomatic controls

    Measured: baseline

Secondary outcomes (14)
  1. Difference in age between patients carriers and non-carriers of defective (hypomorphic) gene

    Evaluate whether the below parameters differs between patients carriers and non-carriers of defective (hypomorphic) gene:

    • age in years

    Measured: baseline

  2. Difference in gender between patients carriers and non-carriers of defective (hypomorphic) gene

    Evaluate whether the below parameters differs between patients carriers and non-carriers of defective (hypomorphic) gene:

    • gender

    Measured: baseline

  3. Difference in ethnicity between patients carriers and non-carriers of defective (hypomorphic) gene

    Evaluate whether the below parameters differs between patients carriers and non-carriers of defective (hypomorphic) gene:

    • ethnicity

    Measured: baseline

  4. Difference in IBS subtype between patients carriers and non-carriers of defective (hypomorphic) gene

    Evaluate whether the below parameters differs between patients carriers and non-carriers of defective (hypomorphic) gene:

    • number of patients with IBS with diarrhoea (IBS-D) and with mixed bowel habit (IBS-M)

    Measured: baseline

  5. Difference in post-infectious onset between patients carriers and non-carriers of defective (hypomorphic) gene

    Evaluate whether the below parameters differs between patients carriers and non-carriers of defective (hypomorphic) gene:

    • number of patients with post-infectious onset

    Measured: baseline

  6. Difference in number of previous abdominal surgery between patients carriers and non-carriers of defective (hypomorphic) gene

    Evaluate whether the below parameters differs between patients carriers and non-carriers of defective (hypomorphic) gene:

    • number of patients with IBS with previous abdominal surgery

    Measured: baseline

  7. Difference in symptoms presentations between patients carriers and non-carriers of defective (hypomorphic) gene

    Evaluate whether the below parameters differs between patients carriers and non-carriers of defective (hypomorphic) gene:

    • IBS symptoms severity score for adults. This score range between 0 and 500 and a change of at least 50 is considered a clinically relevant change.

    Measured: baseline

  8. Difference in anxiety and depression between patients carriers and non-carriers of defective (hypomorphic) gene

    Evaluate whether the below parameters differs between patients carriers and non-carriers of defective (hypomorphic) gene:

    • Hospital Anxiety and Depression score for adults. A score up to 7 for anxiety and or depression is considered Normal; between 8-10 Borderline abnormal (borderline case) and between 11-21 = Abnormal (case)

    Measured: baseline

  9. Difference in somatisation between patients carriers and non-carriers of defective (hypomorphic) gene

    Evaluate whether the below parameters differs between patients carriers and non-carriers of defective (hypomorphic) gene:

    • Somatization score for adults. a score of 5, 10, and 15 represent cutpoints for low, medium, and high somatic symptom severity, respectively.

    Measured: baseline

  10. Difference in habitual intake of sugars between patients carriers and non-carriers of defective (hypomorphic) gene

    Evaluate whether the below parameters differs between patients carriers and non-carriers of defective (hypomorphic) gene:

    • Total glucose and fructose and excess fructose, lactose, sorbitol, mannitol, oligosaccharides (Fructans and GOS) as measured by CNAQ questionnaire for adults and children

    Measured: baseline

  11. Difference in quality of life between patients carriers and non-carriers of defective (hypomorphic) gene

    Evaluate whether the below parameters differs between patients carriers and non-carriers of defective (hypomorphic) gene:

    • Quality of Life as measured by the Pediatric Quality of Life Inventory™ Gastrointestinal Symptoms (PedsQL™ GI Symptoms) Scale. The high.er the PedsQL score, the better the quality of life

    Measured: baseline

  12. Difference in symptoms between patients carriers and non-carriers of defective (hypomorphic) gene

    Evaluate whether the below parameters differs between patients carriers and non-carriers of defective (hypomorphic) gene:

    • GI symptoms using those reported in the Pediatric Quality of Life Inventory™ Gastrointestinal Symptoms Module

    Measured: baseline

  13. Difference in anxiety and depression between paediatric patients carriers and non-carriers of defective (hypomorphic) gene

    Evaluate whether the below parameters differs between patients carriers and non-carriers of defective (hypomorphic) gene:

    • Anxiety, Depression as measured by the Pediatric Patient-Reported Outcomes Measurement Information System (PROMIS®). This use a T-score metric in which 50 is the mean of a relevant reference population and 10 is the standard deviation (SD) of that population.

    On the T-score metric:

    A score of 40 is one SD lower than the mean of the reference population. A score of 60 is one SD higher than the mean of the reference population.

    Measured: baseline

  14. Difference in in vitro SI enzyme activity in human cells with defective gene as compare with those with normal gene

    Difference in the intensity of the SI protein bands of immunoprecipitations of monoclonal anti-SI antibodies that recognize different conformations of the SI protein

    Measured: baseline

Timeline

From the start of the study to its completion; the mark is today. Estimated dates are the sponsor’s plan.

  1. First posted3 Apr 2023
  2. Study start23 Jul 2024
  3. Primary completion30 Sep 2025
  4. Study completion31 Mar 2026 (estimated)

Resources

More details

For doctors and researchers: how the study is designed, who runs it, and its registry IDs.

Study design
Study type
Observational
Observational model
Case-control
Time perspective
Prospective
Enrolment
2,000 participants (estimated)
IDs, dates and publications
ClinicalTrials.gov ID
NCT05795049
Sponsor's protocol ID
20GA093
Other IDs
288003
Acronym
GenMalCarb
Status last verified
Dec 2025
First submitted
23 Jan 2023
Last updated
19 Dec 2025
Results posted
No
FDA-regulated drug
No
FDA-regulated device
No
Individual data sharing
No

Publications

  • Ford AC, Lacy BE, Talley NJ. Irritable Bowel Syndrome. N Engl J Med. 2017 Jun 29;376(26):2566-2578. doi: 10.1056/NEJMra1607547. No abstract available.

    PubMed 28657875
  • Shepherd SJ, Lomer MC, Gibson PR. Short-chain carbohydrates and functional gastrointestinal disorders. Am J Gastroenterol. 2013 May;108(5):707-17. doi: 10.1038/ajg.2013.96. Epub 2013 Apr 16.

    PubMed 23588241
  • Eswaran SL, Chey WD, Han-Markey T, Ball S, Jackson K. A Randomized Controlled Trial Comparing the Low FODMAP Diet vs. Modified NICE Guidelines in US Adults with IBS-D. Am J Gastroenterol. 2016 Dec;111(12):1824-1832. doi: 10.1038/ajg.2016.434. Epub 2016 Oct 11.

    PubMed 27725652
  • Ament ME, Perera DR, Esther LJ. Sucrase-isomaltase deficiency-a frequently misdiagnosed disease. J Pediatr. 1973 Nov;83(5):721-7. doi: 10.1016/s0022-3476(73)80362-2. No abstract available.

    PubMed 4742566
  • Chumpitazi BP, Lewis J, Cooper D, D'Amato M, Lim J, Gupta S, Miranda A, Terry N, Mehta D, Scheimann A, O'Gorman M, Tipnis N, Davies Y, Friedlander J, Smith H, Punati J, Khlevner J, Setty M, Di Lorenzo C. Hypomorphic SI genetic variants are associated with childhood chronic loose stools. PLoS One. 2020 May 20;15(5):e0231891. doi: 10.1371/journal.pone.0231891. eCollection 2020.

    PubMed 32433684
  • Henstrom M, Diekmann L, Bonfiglio F, Hadizadeh F, Kuech EM, von Kockritz-Blickwede M, Thingholm LB, Zheng T, Assadi G, Dierks C, Heine M, Philipp U, Distl O, Money ME, Belheouane M, Heinsen FA, Rafter J, Nardone G, Cuomo R, Usai-Satta P, Galeazzi F, Neri M, Walter S, Simren M, Karling P, Ohlsson B, Schmidt PT, Lindberg G, Dlugosz A, Agreus L, Andreasson A, Mayer E, Baines JF, Engstrand L, Portincasa P, Bellini M, Stanghellini V, Barbara G, Chang L, Camilleri M, Franke A, Naim HY, D'Amato M. Functional variants in the sucrase-isomaltase gene associate with increased risk of irritable bowel syndrome. Gut. 2018 Feb;67(2):263-270. doi: 10.1136/gutjnl-2016-312456. Epub 2016 Nov 21.

    PubMed 27872184
  • Garcia-Etxebarria K, Zheng T, Bonfiglio F, Bujanda L, Dlugosz A, Lindberg G, Schmidt PT, Karling P, Ohlsson B, Simren M, Walter S, Nardone G, Cuomo R, Usai-Satta P, Galeazzi F, Neri M, Portincasa P, Bellini M, Barbara G, Jonkers D, Eswaran S, Chey WD, Kashyap P, Chang L, Mayer EA, Wouters MM, Boeckxstaens G, Camilleri M, Franke A, D'Amato M. Increased Prevalence of Rare Sucrase-isomaltase Pathogenic Variants in Irritable Bowel Syndrome Patients. Clin Gastroenterol Hepatol. 2018 Oct;16(10):1673-1676. doi: 10.1016/j.cgh.2018.01.047. Epub 2018 Feb 21.

    PubMed 29408290
  • Thingholm L, Ruhlemann M, Wang J, Hubenthal M, Lieb W, Laudes M, Franke A, D'Amato M. Sucrase-isomaltase 15Phe IBS risk variant in relation to dietary carbohydrates and faecal microbiota composition. Gut. 2019 Jan;68(1):177-178. doi: 10.1136/gutjnl-2017-315841. Epub 2018 Jan 13. No abstract available.

    PubMed 29331942
  • Husein DM, Naim HY. Impaired cell surface expression and digestive function of sucrase-isomaltase gene variants are associated with reduced efficacy of low FODMAPs diet in patients with IBS-D. Gut. 2020 Aug;69(8):1538-1539. doi: 10.1136/gutjnl-2019-319411. Epub 2019 Jul 22. No abstract available.

    PubMed 31331993
  • Zheng T, Eswaran S, Photenhauer AL, Merchant JL, Chey WD, D'Amato M. Reduced efficacy of low FODMAPs diet in patients with IBS-D carrying sucrase-isomaltase (SI) hypomorphic variants. Gut. 2020 Feb;69(2):397-398. doi: 10.1136/gutjnl-2018-318036. Epub 2019 Jan 18. No abstract available.

    PubMed 30658996
  • Spiller RC, Thompson WG. Bowel disorders. Am J Gastroenterol. 2010 Apr;105(4):775-85. doi: 10.1038/ajg.2010.69. No abstract available.

    PubMed 20372130
  • Rasquin A, Di Lorenzo C, Forbes D, Guiraldes E, Hyams JS, Staiano A, Walker LS. Childhood functional gastrointestinal disorders: child/adolescent. Gastroenterology. 2006 Apr;130(5):1527-37. doi: 10.1053/j.gastro.2005.08.063.

    PubMed 16678566
  • Francis CY, Morris J, Whorwell PJ. The irritable bowel severity scoring system: a simple method of monitoring irritable bowel syndrome and its progress. Aliment Pharmacol Ther. 1997 Apr;11(2):395-402. doi: 10.1046/j.1365-2036.1997.142318000.x.

    PubMed 9146781
  • Snaith RP. The Hospital Anxiety And Depression Scale. Health Qual Life Outcomes. 2003 Aug 1;1:29. doi: 10.1186/1477-7525-1-29.

    PubMed 12914662
  • Spiller RC, Humes DJ, Campbell E, Hastings M, Neal KR, Dukes GE, Whorwell PJ. The Patient Health Questionnaire 12 Somatic Symptom scale as a predictor of symptom severity and consulting behaviour in patients with irritable bowel syndrome and symptomatic diverticular disease. Aliment Pharmacol Ther. 2010 Sep;32(6):811-20. doi: 10.1111/j.1365-2036.2010.04402.x.

    PubMed 20629976

Questions about this trial

What is this clinical trial studying?

An observational study of Irritable Bowel Syndrome (IBS) and Sucrase Isomaltase Deficiency, run by Nottingham University Hospitals NHS Trust at 1 site in United Kingdom.

The full registered description is in the About this study section and the official record.

Who may be eligible to take part?

The sponsor lists 7 inclusion and 10 exclusion criteria. Eligibility is decided by the study team after screening, so read the full criteria and contact a listed site.

Is this clinical trial currently recruiting?

The record says: under way, not looking for participants, as of the sponsor's last update on 19 Dec 2025. Status can change between updates, so confirm with the study contact before making plans.

Where is the study taking place?

The record lists 1 site in United Kingdom. Whether a site is taking part right now should be confirmed with that site. See every site.

What are the possible benefits and risks?

They depend on the study and the treatment, and no study can promise a benefit. The study team explains the known risks during informed consent, before anyone joins; the record itself does not list them.

Are results available for this study?

This study is still under way. Results are not available in the source record yet.

How can a doctor refer a patient or contact the research team?

The record lists no contact. The official record names the sponsor, who can be asked directly. AzTrials does not enrol participants or take referrals.

What does the primary outcome measure?

number of IBS-D and IBS-M with of SI and CDG hypomorphic variants as compared to asymptomatic controls (time frame: baseline). It is what the study was designed to measure, not a finding.

Where can I read the original study information?

On the ClinicalTrials.gov record for NCT05795049, which also lists 17 linked publications.

Does a listing mean the treatment is approved or proven to work?

No. A listing means the study is registered. It does not show that the treatment is safe, works, or is approved by a regulator.

How often is this information updated?

AzTrials copies changed records from ClinicalTrials.gov every night and reloads the whole registry every week. The sponsor last updated this record on 19 Dec 2025.

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