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Sickle Cell DisordersGenoMed4ALLNCT06019208

GenoMed4ALL: Improving SCD Classification and Prognosis by AI

An observational study of Sickle Cell Disorders, run by Hospital Universitari Vall d'Hebron Research Institute at 5 sites in 4 countries.

Unknown status

Status not confirmed. The sponsor has not verified this record for over two years, so it may be out of date.

Official record
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Trial summary

GenoMed4All 'Genomics and Personalized Medicine for all though Artificial Intelligence in Haematological Diseases' aims to advance on individual SCD patients' disease characterisation and to improve the monitoring of patients' health status, optimise clinical therapy guidance and ultimately improved health outcomes by… Read more about this study

Who is it for?
Ages 1 year and older
Conditions the study is for
Sickle Cell Disorders
How many people
1,000 participants
Where
5 sitesin 4 countries
Study dates
1 Jan 2021to 31 Dec 2024
Phase
Observational
Are there results?
None posted in the registry

Key requirements

Who can take part, as listed by the sponsor. Only the study team can confirm whether you are eligible, so take this list to your doctor.

  • Ages 1 year and older
  • All sexes
  • No healthy volunteers
  • Child, Adult, Older adult

Study population: Patients affected by SCD

Who may be able to join

  • Patients older than 1 year, diagnosed with SCD, all genotypes.

Who cannot join

  • Patients treated with stem cell transplant or gene therapy.
  • Patients younger than 1 year old.

Trial locations and contacts

5 sites in 4 countries.

5 sites in 4 countries

France2 sites
  • APHP Henri Mondor

    Créteil, 94000

  • APHP Necker

    Paris, 75015

Other trials in France

Italy1 site
  • Azienda Ospedale Università Padova

    Padova, 35121

Other trials in Italy

Netherlands1 site
  • UMC Utrecht

    Utrecht, 3584

Other trials in Netherlands

Spain1 site
  • Hospital Universitari Vall d'Hebron Research Institute

    Barcelona, 08035

Other trials in Spain

About this study

Official title: Genomics and Personalized Medicine for All Though Artificial Intelligence in Haematological Diseases

GenoMed4All 'Genomics and Personalized Medicine for all though Artificial Intelligence in Haematological Diseases' aims to advance on individual SCD patients' disease characterisation and to improve the monitoring of patients' health status, optimise clinical therapy guidance and ultimately improved health outcomes by the identification of biomarkers and the development of individual (risk) models in SCD. Genomed4All supports the pooling of genomic, clinical data and other "-omics" health through a secure and privacy respectful data sharing platform based on the novel Federated Learning scheme, to advance research in personalised medicine in haematological diseases thanks to advanced Artificial Intelligence (AI) models and standardised interoperable sharing of cross-border data, without needing to directly share any sensitive clinical patients' data. The SCD Use case will gather multi-modal clinical and -OMICs data from 1,000 SCD patients in 4 EU-MS: France, Italy, Spain and The Netherlands.

In close collaboration with the European Reference Network on Rare Hematological Diseases (ERN-EuroBloodNet, GA101157011), GENOMED4ALL involves multiple clinical partners from the network, while leveraging on healthcare information and repositories that will be gathered incorporating interoperability standards as promoted by ERN-EuroBloodNet central registry, the European Rare Blood Disorders Platform.

Read the detailed description

SCD is a chronic life-threatening multisystem disorder, autosomal recessively inherited, caused by the presence of abnormal hemoglobin S (HbS) resulting from the sickle mutation in the HBB gene. In spite of being a single gene mutation disorder, SCD presents extreme phenotypic variability that is incompletely understood. Several genetic and environmental factors are supposed to have an impact on disease phenotype, clinical manifestations, progression of organ damage and quality of life throughout the lifespan.

Although significant progress has been made over the past few decades in the highly complex pathophysiology of SCD, the possibility of personalised medicine is still in its infancy. There is a lack of markers of disease severity, prognosis, and response to treatment. In particular, the heterogeneity of clinical expression of the disease along with long-term chronic complications due to the increased lifespan of patients should be addressed by innovative and personalised treatments. Furthermore, assessing the role of the novel treatments both in regards of long-term efficacy and safety but also of cost/efficacy ratio are required. The scarcity and fragmentation of SCD data prevent researchers from reaching the critical numbers needed for basic and clinical research. Research and data-driven solutions are therefore essential to improve the care of SCD patients and their quality of life.

The availability of numerous treatment options as well as the high disease heterogeneity highlight the need to address patients' severity profiles and offer the best care for each affected individual. Developing the GENOMED4ALL AI algorithms for SCD will be of great importance for the in-depth characterization and prediction of the diverse complications of SCD. The primary endpoints of interest include:

  • Improving SCD classification
  • Develop a probability score to predict various patterns recognized by Artificial Intelligence (AI) based analyzing brain magnetic resonance imaging (Radiomics)
  • To develop predictive risk scores for the occurrence of most prevalent and severe clinical outcomes
  • To develop predictive risk scores over time for the appearance of most prevalent and severe clinical outcomes.

RADeep will be used for standardization of existing clinical and laboratory data. A CRF was developed, including just over 250 data elements. The GenoMed4All CRF builds on previous work performed by RADeep and includes the "set of common data elements for rare disease registration", which was released in December 2017 as result of a dedicated working group facilitated by the Joint Research Centre (JRC). This approach will ensure interoperability with other similar initiatives in Europe and will also enable the collected data to be reused for future research studies.

Genome-wide Association Studies (GWAS) extends the concept of association studies to assay hundreds of thousands of single-nucleotide polymorphisms (SNPs) simultaneously and provide a cost-effective way to explore genetic variants across the whole genome. But despite considerable interest in identifying genetic modifiers in SCD, the majority of previous GWAS searched for genetic linkage and association with HbF levels, an established ameliorating factor of disease severity. Addintionally, the utilization of data science and artificial intelligence (AI) has been limited in SCD research. Therefore, the generation of GWAS data combined with the use of the most recent imputation panel for imputation offers an opportunity for the development of novel AI techniques and for novel discoveries in SCD.

Silent Cerebral Infarcts (SCIs) are a significant cause of morbidity in SCD: they affect 25% of children by the age of 6 and 40% by the age of 18 with consequences on cognition, schooling, working capacity and quality of life. Hence, one of the aims of the SCD clinical case in GENOMED4ALL is the use of radiomics - quantitative method for the evaluation and interpretation of medical images- and AI firstly to develop an automatic and uniform identification and characterization of SCI on MRIs, secondly, to correlate imaging data with other types of OMICS data in order to predict risk of occurrence and recurrence.

The deformability of red blood cells (RBC) from individuals with SCD is markedly abnormal, regardless of genotype. Several studies reported some associations between the degree of impairment of RBC deformability measured at steady state in SCD patients and the presence of chronic complications, such as priapism, leg ulcers, glomerulopathy, etc. The recently developed technique of oxygen gradient ektacytometry allows for a more comprehensive functional characterization and rheological behavior of SCD RBCs over a range of oxygen tensions to test whether the rheological changes could reflect clinical severity/complications.Data on rheological characteristics of RBC on all patients in steady state is going to be obtained through Laser Optical Rotational Red Cell Analyzer (Lorrca) ektacytometer (RR Mechatronics).

By combining a large amount standardized multimodal (clinical, multi-omics, and imaging) datasets, the investigators hypothesize that AI will allow to understand better SCD biology and classification, enhance prognostic/predictive capacity of currently available tools and apply treatments in a more targeted way, thus facilitating the implementation of personalized medicine program across EU.

Keywords
Artificial Intelligence, Hematological diseases, GWAS, Personalized medicine, Prognosis, Disease classification, Sickle cell disease, Radiomics, Metabolomics, Clinical unmet needs
Medical subject headings
Anemia, Sickle Cell, Hematologic Diseases

What participants receive

What participants receive. In a randomised study each person is assigned to one group by chance.

Study groups in NCT06019208
Study groupRoleWhat they receive
GENOMED4ALL - SCD patientsNon transplanted SCD patients aged over 1 year.

What is being measured

The primary outcome is the main question the study is designed to answer.

  1. Improving SCD classification

    To improve classification of SCD by integrating clinical and hematological information with genomic features. To address this issue, different methods of statistical learning (Dirichlet processes (DP), Bayesian networks (BN)) and machine learning (deep learning physics informed neural network, constrained regression and deep models) will be compared in order to define specific genotype-phenotype correlations and to develop a new disease classification.

    Measured: through study completion, an average of 2 years

  2. Improve diagnosis of cerebrovascular complications.

    Develop an artificial intelligence algorithm for early diagnosis of silent infarcts by analyzing brain magnetic resonance imaging (Radiomics).

    Measured: through study completion, an average of 2 years

Timeline

From the start of the study to its completion; the mark is today. Estimated dates are the sponsor’s plan.

  1. First posted31 Aug 2023
  2. Study start1 Jan 2021
  3. Primary completion30 Sep 2023
  4. Study completion31 Dec 2024 (estimated)

Resources

More details

For doctors and researchers: how the study is designed, who runs it, and its registry IDs.

Study design
Study type
Observational
Observational model
Cohort
Time perspective
Cross-sectional
Enrolment
1,000 participants (estimated)
IDs, dates and publications
ClinicalTrials.gov ID
NCT06019208
Sponsor's protocol ID
928338
Acronym
GenoMed4ALL
Status last verified
Jun 2023
First submitted
15 Jun 2023
Last updated
12 Apr 2024
Results posted
No
Data monitoring committee
No
FDA-regulated drug
No
FDA-regulated device
No

Publications

  • Aguilar Martinez P, Angastiniotis M, Eleftheriou A, Gulbis B, Manu Pereira Mdel M, Petrova-Benedict R, Corrons JL. Haemoglobinopathies in Europe: health & migration policy perspectives. Orphanet J Rare Dis. 2014 Jul 1;9:97. doi: 10.1186/1750-1172-9-97.

    PubMed 24980780
  • INGRAM VM. Abnormal human haemoglobins. III. The chemical difference between normal and sickle cell haemoglobins. Biochim Biophys Acta. 1959 Dec;36:402-11. doi: 10.1016/0006-3002(59)90183-0. No abstract available.

    PubMed 13852872
  • Bunn HF. Pathogenesis and treatment of sickle cell disease. N Engl J Med. 1997 Sep 11;337(11):762-9. doi: 10.1056/NEJM199709113371107. No abstract available.

    PubMed 9287233
  • Kato GJ, Piel FB, Reid CD, Gaston MH, Ohene-Frempong K, Krishnamurti L, Smith WR, Panepinto JA, Weatherall DJ, Costa FF, Vichinsky EP. Sickle cell disease. Nat Rev Dis Primers. 2018 Mar 15;4:18010. doi: 10.1038/nrdp.2018.10.

    PubMed 29542687
  • Steinberg MH, Sebastiani P. Genetic modifiers of sickle cell disease. Am J Hematol. 2012 Aug;87(8):795-803. doi: 10.1002/ajh.23232. Epub 2012 May 28.

    PubMed 22641398
  • Alapan Y, Fraiwan A, Kucukal E, Hasan MN, Ung R, Kim M, Odame I, Little JA, Gurkan UA. Emerging point-of-care technologies for sickle cell disease screening and monitoring. Expert Rev Med Devices. 2016 Dec;13(12):1073-1093. doi: 10.1080/17434440.2016.1254038. Epub 2016 Nov 22.

    PubMed 27785945
  • Bao EL, Lareau CA, Brugnara C, Fulcher IR, Barau C, Moutereau S, Habibi A, Badaoui B, Berkenou J, Bartolucci P, Galacteros F, Platt OS, Mahaney M, Sankaran VG. Heritability of fetal hemoglobin, white cell count, and other clinical traits from a sickle cell disease family cohort. Am J Hematol. 2019 May;94(5):522-527. doi: 10.1002/ajh.25421. Epub 2019 Feb 6.

    PubMed 30680775
  • Thein SL, Menzel S, Peng X, Best S, Jiang J, Close J, Silver N, Gerovasilli A, Ping C, Yamaguchi M, Wahlberg K, Ulug P, Spector TD, Garner C, Matsuda F, Farrall M, Lathrop M. Intergenic variants of HBS1L-MYB are responsible for a major quantitative trait locus on chromosome 6q23 influencing fetal hemoglobin levels in adults. Proc Natl Acad Sci U S A. 2007 Jul 3;104(27):11346-51. doi: 10.1073/pnas.0611393104. Epub 2007 Jun 25.

    PubMed 17592125
  • Thein SL. Genetic modifiers of the beta-haemoglobinopathies. Br J Haematol. 2008 May;141(3):357-66. doi: 10.1111/j.1365-2141.2008.07084.x.

    PubMed 18410570
  • Rab MAE, van Oirschot BA, Bos J, Merkx TH, van Wesel ACW, Abdulmalik O, Safo MK, Versluijs BA, Houwing ME, Cnossen MH, Riedl J, Schutgens REG, Pasterkamp G, Bartels M, van Beers EJ, van Wijk R. Rapid and reproducible characterization of sickling during automated deoxygenation in sickle cell disease patients. Am J Hematol. 2019 May;94(5):575-584. doi: 10.1002/ajh.25443. Epub 2019 Mar 8.

    PubMed 30784099
  • Collado A, Boaro MP, van der Veen S, Idrizovic A, Biemond BJ, Beneitez Pastor D, Ortuno A, Cela E, Ruiz-Llobet A, Bartolucci P, de Montalembert M, Castellani G, Biondi R, Manara R, Sanavia T, Fariselli P, Kountouris P, Kleanthous M, Alvarez F, Zazo S, Colombatti R, van Beers EJ, Manu-Pereira MDM. Challenges and Opportunities of Precision Medicine in Sickle Cell Disease: Novel European Approach by GenoMed4All Consortium and ERN-EuroBloodNet. Hemasphere. 2023 Feb 22;7(3):e844. doi: 10.1097/HS9.0000000000000844. eCollection 2023 Mar. No abstract available.

    PubMed 36844183

Questions about this trial

What is this clinical trial studying?

An observational study of Sickle Cell Disorders, run by Hospital Universitari Vall d'Hebron Research Institute at 5 sites in 4 countries.

The full registered description is in the About this study section and the official record.

Who may be eligible to take part?

The sponsor lists 1 inclusion and 2 exclusion criteria. Eligibility is decided by the study team after screening, so read the full criteria and contact a listed site.

Is this clinical trial currently recruiting?

The record says: status not confirmed, as of the sponsor's last update on 12 Apr 2024. Status can change between updates, so confirm with the study contact before making plans.

Where is the study taking place?

The record lists 5 sites in France, Italy, Netherlands, Spain. Whether a site is taking part right now should be confirmed with that site. See every site.

What are the possible benefits and risks?

They depend on the study and the treatment, and no study can promise a benefit. The study team explains the known risks during informed consent, before anyone joins; the record itself does not list them.

Are results available for this study?

Results are not available in the source record.

How can a doctor refer a patient or contact the research team?

The record lists no contact. The official record names the sponsor, who can be asked directly. AzTrials does not enrol participants or take referrals.

What does the primary outcome measure?

Improving SCD classification (time frame: through study completion, an average of 2 years). The study lists 2 primary outcomes in all. It is what the study was designed to measure, not a finding.

Where can I read the original study information?

On the ClinicalTrials.gov record for NCT06019208, which also lists 11 linked publications.

Does a listing mean the treatment is approved or proven to work?

No. A listing means the study is registered. It does not show that the treatment is safe, works, or is approved by a regulator.

How often is this information updated?

AzTrials copies changed records from ClinicalTrials.gov every night and reloads the whole registry every week. The sponsor last updated this record on 12 Apr 2024.

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