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Microbial ColonizationFEEDMeNCT06395324

Fiber Effectively Educates & Directs the Microbiome Study

A study testing High arabinose diet in people with Microbial Colonization, run by University of California, Davis at 1 site in United States.

Completed

Finished. The study has ended and is not enrolling. Results may be posted on the official record.

Official record
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Trial summary

The FEEDMe Study is a single-group, open label pilot study exploring how diverse, commercially available foods rich in arabinose influence the gut microbiome in adults from diverse populations. Read more about this study

Who is it for?
Ages 18 to 50 yearsHealthy volunteers can take part
Conditions the study is for
Microbial Colonization
What is being tested?
High arabinose diet
Could I receive a placebo?
No, everyone receives an active treatment
How many people
48 participants
Where
1 siteUnited States
Study dates
21 Aug 2024to 9 Jun 2025
Phase
Interventional
Are there results?
None posted in the registry

Key requirements

Who can take part, as listed by the sponsor. Only the study team can confirm whether you are eligible, so take this list to your doctor.

  • Ages 18 to 50 years
  • All sexes
  • Healthy volunteers accepted
  • Adult

Who may be able to join

  • Healthy adults;
  • Age 18-50 years of age;
  • BMI between 18.5 and 34.9 kg/m2;
  • Lives within a 40-mile radius from the UC Davis campus in Davis or UCDMC in - Sacramento, CA or study personnel residences;
  • Consumes food at least three times (meals/snacks) per day;
  • Non-alcohol consumers or those who consume alcohol in moderation defined as having up to 1 drink per day for women and up to 2 drinks per day for men;
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  • Normal stool frequency defined as 3 times per week to 3 times per day;
  • Has been weight-stable (has not lost or gained 10% of body weight) within the past 3 months;
  • Speaks, writes, and understands English to complete study activities;
  • Lives in a household whereby stool samples and study food can be reliably stored without interference from other household members (i.e., excluding individuals who reside in fraternity, sorority houses whereby freezer access is open to all members);
  • Lives in a household with access to Wi-Fi and/or cellular access to enable completion of electronic questionnaires (i.e., PIP forms) on their own personal computer, cell phone, or electronic device;
  • Willingness to consume study-provided foods for 18 consecutive days;
  • Willingness to fill out a short online survey about the amount of each study food they consumed during the two-week intervention;
  • Willingness to collect stool samples on three separate days and store them in their home freezer before they (or study personnel) transport them to UC Davis;
  • Willingness to complete online weekly health questionnaires;
  • Willingness to complete two online enrollment questionnaires about diet and health history;
  • Willingness to complete Daily Stool Logs (7 consecutive days) at 3 separate times during the study period;
  • Willingness to complete two 24-hour dietary recalls by video call with study personnel (prior to each of the 3 stool collections required for the study);
  • Willingness to have four in-person visits (at their homes or on campus);
  • Willingness to use their personal computer, cell phone, or electronic device to meet virtually with study personnel;
  • Willingness to refrain from consuming fermented foods, or foods with probiotics or probiotic supplements and other foods listed on the study materials (confounding variables of the intestinal microbiome) during the study period;
  • Willingness to refrain from consuming iron containing dietary supplements (multi-vitamin is permitted) and fiber supplements during the study period;
  • Willingness to refrain from changing (starting a new or discontinuing a current) routine vitamin/mineral supplement regimen during the study period;
  • Willingness to refrain from changing (starting a new or discontinuing a current) routine medication regimen during the study period;
  • Willingness to refrain from consuming laxatives during the study period;
  • Willingness to refrain from enrolling in other experimental trials during the study period;
  • Willingness to avoid binge alcohol drinking during the study period defined by the CDC as: drinking 5 or more drinks on a single occasion for men or 4 or more drinks on a single occasion for women, generally within about 2 hours;
  • Willingness to refrain from using tobacco (smoking or chewing or using E-cigarettes) or smoking, vaping or consuming cannabis or use of other illicit drugs during the study period;
  • Willingness to refrain from having any non-emergency, elective surgeries including dental surgery or invasive medical procedures during the study period;
  • Willingness to take a study-provided urine pregnancy test if female;
  • Mid- to high-income families and low-income families based on household income or eligibility for the California Supplemental Nutrition Assistance Program (SNAP) or Special Supplemental Nutrition Program for Women, Infants, and Children (WIC).

Who cannot join

  • Currently pregnant or plans to become pregnant several weeks prior to enrollment and during the study period;
  • Currently lactating;
  • Use of restrictive diets such as caloric restriction, intermittent fasting, keto-diet, gluten-free, grain-free, dairy-free within the past 6 months;
  • Known or suspected allergy (childhood allergies pre-puberty is acceptable) to milk, egg, wheat, legumes including soybeans; peanuts, tree nuts and seeds, and any fruits and vegetables used in the study;
  • Known or suspected sensitivity or intolerances to any foods and ingredients used in the study (e.g., lactose intolerance, etc.) such as milk, egg, wheat, legumes including soybeans, peanuts, tree nuts and seeds and any fruits and vegetables used in the study;
  • Aversions to or avoidance in eating foods and ingredients used in the study (legumes/beans, fruits, vegetables, peanuts, tree nuts and seeds);
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  • History of any type of eating disorder (anorexia nervosa, bulimia, etc.);
  • History of any of the following: Positive infection of HIV, AIDS, hepatitis B or C; GI tract abnormalities; Any type of bariatric surgery or other gastric surgery involving the removal of sections of the GI tract (appendectomy or hernia repairs are acceptable), or gall-bladder removal; GI-related conditions such as malabsorption disease, celiac disease, Crohn's disease, colitis, inflammatory bowel disease (IBD), irritable bowel syndrome (IBS); Cancer (history of skin cancer that is in remission is acceptable), heart, liver, lung, endocrine, or kidney diseases; Type 1 or 2 diabetes mellitus; Cushing syndrome; Primary immune deficiency or autoimmune diseases; Uncontrolled hyper or hypothyroidism; uncontrolled hypertension (controlled with medication is acceptable);
  • History of stomach ulcers or diagnosis with H. pylori infection; chronic gastritis within the past 12 months;
  • Gastroenteritis (caused by stomach flu or food poisoning caused by virus or bacteria) within the past 4 weeks;
  • Have any medical or nutritional conditions that require iron supplementation;
  • Intake of iron supplements (stand-alone doses that are not part of a multi-vitamin) within the past 4 weeks;
  • Positive test for COVID-19 based on a rapid test or PCR within the past 2 weeks;
  • Use of oral, intramuscular or IV antibiotics or sulfonamides within the past 3 months;
  • Vaccinations received less than the past 2 weeks (may enroll two weeks following treatment with vaccinations);
  • Use of biologics that suppress the immune system, i.e., Lantus, Remicade, Rituxan, Humira, Herceptin, Avastin, Lucentis, Enbrel, for 2 weeks or longer or within the past 4 weeks;
  • Use of injectable (or pill) weight loss medications or biologics such as Ozempic, Wegovy, Rybelsus, etc. within the past 4 weeks;
  • Surgery or an invasive medical procedure within the past 3 months;
  • Plan to have any elective surgeries including dental surgery or invasive medical procedures during the study period;
  • Illness (flu, cold, etc.) within the past 2 weeks (free of all illness symptoms within the past 2 weeks);
  • Routine use of medications found to alter the gut microbiome such as: Tylenol, aspirin, naproxen sodium or ibuprofen (except for acute uses with sickness or injury), anticholinergic inhalers, opioids, proton pump inhibitors, gastric acid suppressors (e.g., pepcid), metformin, statins, steroids (oral-inhaler is acceptable), 6-Marcaptopurine, Azathioprine or any other immunosuppressants on a daily basis within the past 6 months;
  • Plans to start or plans to have changes made to a dose (including starting or adjusting an existing dose) of selective serotonin reuptake inhibitors (SSRIs), or antipsychotics during the study period;
  • Plans to start or plans to have changes made to a dietary supplement regimen (vitamins/minerals/herbal supplements) or a medication regimen during the study period;
  • Persistent (lasts longer than 2 weeks and less than 4 weeks) or chronic (lasts at least 4 weeks) diarrhea (loose, watery stools three or more times a day) within the past 6 months;
  • Chronic constipation (fewer than 3 stools per week, stool form that is mostly hard or lumpy and difficult stool passage (need to strain or incomplete evacuation) with the past 3 months;
  • Use of probiotic supplements within the past 8 weeks;
  • Individuals who use laxatives more than once per week;
  • Individuals who use fiber supplements more than once per week;
  • Current tobacco (smoking or chewing) or E-cigarette users or individuals who quit using less than one year before enrolling in the study;
  • Frequent cannabis use (eating, smoking, or vaping) defined as greater than 4 times per week and greater than 14 times per month;
  • Use of illicit drugs (cocaine, crack, heroine, unprescribed fentanyl etc.);
  • Excessive alcohol drinkers: For men, heavy drinking is typically defined as consuming 15 drinks or more per week. For women, heavy drinking is typically defined as consuming 8 drinks or more per week (https://www.cdc.gov/alcohol/faqs.htm);
  • Individuals who currently live or plan to live within the same household during the study period or who are in intimate relationships with current or past study participants (to avoid horizontal transfer of the gut microbiome),
  • Individuals who plan to travel during the stool collections and intervention phase of the study duration.

Trial locations and contacts

1 site in 1 country.

United States1 site
  • University of California

    Davis, California, 95616

Other trials in United States

About this study

The FEEDMe Study is a single-group, open label pilot study exploring how diverse, commercially available foods rich in arabinose influence the gut microbiome in adults from diverse populations.

Read the detailed description

Upon enrollment, healthy adults will enter a 15-day lead-in period during which they will refrain from consuming specific foods and collect a baseline stool sample. The intervention period will be on days 16-33 during which participants will consume study provided high-arabinose foods. The follow-up period will be on days 34-49 during which participants will no longer eat the study foods and will refrain from consuming specific foods. The total duration of the study will be approximately 7 weeks. Stool samples will be collected on 3 occasions and participants will be asked to complete questionnaires, daily stool logs, dietary intake reports, and 24-hour dietary recalls throughout the course of the study.

Being tested
High arabinose diet
Keywords
Fecal microbiome, Arabinose, Fecal glycome, Fecal short chain fatty acids, Fiber, High arabinose diet
Medical subject headings
Communicable Diseases

What participants receive

What participants receive. In a randomised study each person is assigned to one group by chance.

  • High arabinose dietOther

    Participants will consume a high arabinose diet for 18 consecutive days.

Study groups in NCT06395324
Study groupRoleWhat they receive
Pre, during and post high arabinose foods intakeExperimentalAll individuals will enter a lead-in period consisting of a low arabinose diet, then they will consume a high arabinose diet and then back to the low arabinose diet.
Receives: Other: High arabinose diet

What is being measured

The primary outcome is the main question the study is designed to answer.

  1. Fecal microbiome

    Examine changes to the concentration and distribution of fecal microbiota in response to consuming a high arabinose diet as measured by 16s rRNA sequencing and metagenomics.

    Measured: Change from baseline to days 31 and 47

  2. Fecal glycome

    Determine changes in fecal glycome in response to consumption of a high arabinose diet as measured by metagenomic analysis and mass spectrometry.

    Measured: Change from baseline to days 31 and 47

  3. Fecal SCFAs

    Determine changes in fecal SCFAs in response to consumption of a high arabinose diet as measured by mass spectrometry.

    Measured: Change from baseline to days 31 and 47

  4. Gastrointestinal tolerance

    Assess gastrointestinal tolerance to a high arabinose diet as measured by questionnaires that ask participants to report gastrointestinal symptoms. A list of GI symptoms are listed in the weekly survey and participants will select none, mild, moderate, severe or unsure. The proportion of severe responses will be compared across the study weeks.

    Measured: Change from baseline to days 31 and 47

  5. Stool consistency and frequency

    Determine changes in fecal consistency and frequency in response to a high arabinose diet as measured by questionnaires that ask participants to report their number of stools per day and to rank the consistency of their stools using the Bristol Stool Scale. For seven days prior to each of the three stool collections, participants will rate their stool consistency on a scale from 1-7 and these values will be averaged and compared across the three time points (pre, during and post high arabinose diet). This scale is not continuous but rather nominal and the proportion of 4 and 5 is considered "normal" stoo consistency.

    Measured: Change from baseline to days 16-33

  6. Study food acceptability

    Examine overall acceptability and sensory perceptions of high arabinose commercially available products as measured by questionnaires. Participants will rate how much they like each study food after consuming each one for the first time on a continuous scale from 0 to 100 where 0 equals did not like at all and 100 equals extremely liked. The scores will be reported for each food.

    Measured: Intervention period: days 31-46

  7. Study expansion feasibility

    Evaluate the overall satisfaction of participants' experience for feedback on the study protocol and study duration. At the end of the study, participants will rate their satisfaction on a continuous scale from 0 to 100, where 0 equals not satisfied at all and 100 equals extremely satisfied.

    Measured: Study period: Days 1-49

  8. Follow-up period evaluation

    Evaluate if 14 days of avoiding arabinose foods is a sufficient washout period to result in changes in concentration and distribution of gut microbiota as measured by 16s rRNA sequencing and metagenomics.

    Measured: Follow-up period: days 34-49

Secondary outcomes (2)
  1. Fecal immune markers

    Determine changes in fecal immune and inflammatory markers such as levels of immunoglobulins in response to a high arabinose diet as measured by ELISA and mass spectrometry.

    Measured: Change from baseline to days 31 and 47

  2. Fecal metabolomics

    Determine changes in fecal metabolites and organic acids in response to a high arabinose diet as measured by mass spectrometry.

    Measured: Change from baseline to days 31 and 47

Timeline

From the start of the study to its completion; the mark is today. Estimated dates are the sponsor’s plan.

  1. First posted2 May 2024
  2. Study start21 Aug 2024
  3. Primary completion9 Jun 2025
  4. Study completion9 Jun 2025

Resources

More details

For doctors and researchers: how the study is designed, who runs it, and its registry IDs.

Study design
Study type
Interventional
Phase
Phase N/A
Primary purpose
Basic science
Allocation
Not applicable
Intervention model
Single group
Model description
Subjects will be enrolled and will consume study provided high arabinose foods during the intervention period.
Masking
None (open label)
Enrolment
48 participants (actual)
IDs, dates and publications
ClinicalTrials.gov ID
NCT06395324
Sponsor's protocol ID
2117625
Acronym
FEEDMe
Status last verified
Aug 2025
First submitted
15 Apr 2024
Last updated
27 Aug 2025
Results posted
No
Data monitoring committee
No
FDA-regulated drug
No
FDA-regulated device
No
Individual data sharing
No

Publications

  • So D, Whelan K, Rossi M, Morrison M, Holtmann G, Kelly JT, Shanahan ER, Staudacher HM, Campbell KL. Dietary fiber intervention on gut microbiota composition in healthy adults: a systematic review and meta-analysis. Am J Clin Nutr. 2018 Jun 1;107(6):965-983. doi: 10.1093/ajcn/nqy041.

    PubMed 29757343
  • Gill SK, Rossi M, Bajka B, Whelan K. Dietary fibre in gastrointestinal health and disease. Nat Rev Gastroenterol Hepatol. 2021 Feb;18(2):101-116. doi: 10.1038/s41575-020-00375-4. Epub 2020 Nov 18.

    PubMed 33208922
  • U.S. Department of Agriculture USDoHaHS. Dietary Guidelines for Americans, 2020-2025. 2020(9th Edition).

  • Castillo JJ, Couture G, Bacalzo NP Jr, Chen Y, Chin EL, Blecksmith SE, Bouzid YY, Vainberg Y, Masarweh C, Zhou Q, Smilowitz JT, German JB, Mills DA, Lemay DG, Lebrilla CB. The Development of the Davis Food Glycopedia-A Glycan Encyclopedia of Food. Nutrients. 2022 Apr 14;14(8):1639. doi: 10.3390/nu14081639.

    PubMed 35458202
  • Delannoy-Bruno O, Desai C, Raman AS, Chen RY, Hibberd MC, Cheng J, Han N, Castillo JJ, Couture G, Lebrilla CB, Barve RA, Lombard V, Henrissat B, Leyn SA, Rodionov DA, Osterman AL, Hayashi DK, Meynier A, Vinoy S, Kirbach K, Wilmot T, Heath AC, Klein S, Barratt MJ, Gordon JI. Evaluating microbiome-directed fibre snacks in gnotobiotic mice and humans. Nature. 2021 Jul;595(7865):91-95. doi: 10.1038/s41586-021-03671-4. Epub 2021 Jun 23.

    PubMed 34163075

Questions about this trial

What is this clinical trial studying?

A study testing High arabinose diet in people with Microbial Colonization, run by University of California, Davis at 1 site in United States.

The full registered description is in the About this study section and the official record.

Who may be eligible to take part?

The sponsor lists 31 inclusion and 34 exclusion criteria. Eligibility is decided by the study team after screening, so read the full criteria and contact a listed site.

Is this clinical trial currently recruiting?

The record says: finished, as of the sponsor's last update on 27 Aug 2025. Status can change between updates, so confirm with the study contact before making plans.

Where is the study taking place?

The record lists 1 site in United States. Whether a site is taking part right now should be confirmed with that site. See every site.

What are the possible benefits and risks?

They depend on the study and the treatment, and no study can promise a benefit. The study team explains the known risks during informed consent, before anyone joins; the record itself does not list them.

Are results available for this study?

The study is completed, but results are not available in the source record. That does not mean the treatment did or did not work.

How can a doctor refer a patient or contact the research team?

The record lists no contact. The official record names the sponsor, who can be asked directly. AzTrials does not enrol participants or take referrals.

What does the primary outcome measure?

Fecal microbiome (time frame: Change from baseline to days 31 and 47). The study lists 8 primary outcomes in all. It is what the study was designed to measure, not a finding.

Where can I read the original study information?

On the ClinicalTrials.gov record for NCT06395324, which also lists 5 linked publications.

Does a listing mean the treatment is approved or proven to work?

No. A listing means the study is registered. It does not show that the treatment is safe, works, or is approved by a regulator.

How often is this information updated?

AzTrials copies changed records from ClinicalTrials.gov every night and reloads the whole registry every week. The sponsor last updated this record on 27 Aug 2025; AzTrials last refreshed its copy on 26 Oct 2026.

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