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Carbapenemase-Producing Enterobacterales (CPE) ColonizationNCT07397416

Impact of Implementing a Rapid PCR-based Algorithm for Carbapenemase-producing Enterobacterales (CPE) and Infection Control Bundle in a Tertiary Hospital

A study testing Rapid PCR-based algorithm for CPE detection in people with Carbapenemase-Producing Enterobacterales (CPE) Colonization, run by Hospital Italiano de Buenos Aires.

Not yet recruiting

Opening soon. The study is approved but enrolment has not started yet. Sites may already take enquiries.

Sites and contacts
Official record
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Trial summary

Purpose: Carbapenemase-producing Enterobacterales (CPE) are a growing cause of healthcare-associated infections, linked to high morbidity, mortality, and cost. Current screening methods rely mainly on culture, which can take up to 48 hours and delay infection control actions. Read more about this study

Who is it for?
Ages 18 years and older
What is being tested?
Rapid PCR-based algorithm for CPE detection
Could I receive a placebo?
No, everyone receives an active treatment
How many people
800 participants
Where
No sites listed yet
Study dates
1 Mar 2026to 1 May 2026
Phase
Interventional
Are there results?
Not yet: the study is under way

Key requirements

Who can take part, as listed by the sponsor. Only the study team can confirm whether you are eligible, so take this list to your doctor.

  • Ages 18 years and older
  • All sexes
  • No healthy volunteers
  • Adult, Older adult

Who may be able to join

  • Adult patients aged ≥18 years
  • Patients screened for carbapenemase-producing Enterobacterales (CPE) carriage by perianal swab within the first 5 days of hospital admission
  • Patients newly identified as CPE-colonized, leading to initiation of contact isolation
  • Patients found to be decolonized, leading to discontinuation of contact isolation
  • Patients with indication for active surveillance at hospital admission:
  • Transfer from another healthcare facility
Show all 14Show fewer
  • Hospitalization in another healthcare center within the previous month
  • Patients undergoing active surveillance during hospitalization:
  • First surveillance swab in high-risk neutropenic patients (HAR flag)
  • First surveillance swab in immunosuppressed units, such as hematopoietic stem-cell transplant wards
  • Patients evaluated for discontinuation of contact precautions who meet all of the following:
  • Prior CPE-positive surveillance sample
  • At least 3 months since the last positive result and last hospitalization
  • No systemic antibiotic exposure during that period

Who cannot join

  • Lost samples
  • Insufficient samples
  • Invalid laboratory test results requiring repeat sampling

Trial locations and contacts

No sites are listed yet. Contact the study team or a site near you to ask about taking part.

About this study

Official title: Intervention in the CPE Surveillance Algorithm and Isolation Re-evaluation With the Addition of PCR vs. Culture-based Protocol: Real-life Time Differences

Purpose:

Carbapenemase-producing Enterobacterales (CPE) are a growing cause of healthcare-associated infections, linked to high morbidity, mortality, and cost. Current screening methods rely mainly on culture, which can take up to 48 hours and delay infection control actions.

Read more

This study aims to evaluate the real-life impact of implementing a rapid PCR-based algorithm for CPE detection compared with the standard culture-based protocol, focusing on time differences in isolation and de-isolation decisions in hospitalized patients.

Design:

A quasi-experimental, before-and-after, retrospective study conducted at Hospital Italiano de Buenos Aires (HIBA).

Primary Outcome:

Time (in hours) between rectal swab request and change in isolation status (application or removal of isolation label) before and after PCR implementation.

Population:

Adult patients (≥18 years) admitted between October 2023-April 2024 (pre-intervention) and October 2024-April 2025 (post-intervention), who had contact isolation initiated or discontinued based on CPE surveillance results.

Rationale:

The introduction of rapid molecular testing could reduce operational delays and unnecessary isolation days, optimizing resource use in a setting with high CPE endemicity.

Read the detailed description

Background:

Carbapenemase-producing Enterobacterales (CPE) are critical-priority pathogens associated with increased morbidity, mortality, and healthcare costs. Screening and isolation are recommended infection control measures, yet delays inherent to culture-based methods can hinder timely decision-making and overuse limited isolation rooms.

Objective:

To compare the time to initiation and discontinuation of contact isolation-from swab request to result availability and isolation status update-before and after implementing a rapid PCR-based diagnostic protocol for CPE identification.

Design and Setting:

Retrospective, quasi-experimental before-after study at the Hospital Italiano de Buenos Aires, Argentina. The pre-intervention period covers October 1, 2023-April 30, 2024; the post-intervention period covers October 1, 2024-April 30, 2025.

Intervention:

Incorporation of real-time PCR testing (BD MAX™ System) for CPE genes (bla_KPC, bla_NDM, bla_VIM/IMP, bla_OXA-48-like) into the existing CPE surveillance and isolation reevaluation workflow. The infection control team coordinates sample requests and response actions.

Primary Outcomes:

Time difference (in hours) from surveillance swab request to isolation implementation.

Time difference (in hours) from surveillance swab request to isolation discontinuation.

Secondary Outcomes:

Time differences stratified by weekday versus weekend.

Time differences according to sampling time (08:00-16:00 vs 16:00-08:00).

Time differences according to immunosuppression status.

Time differences in ICU versus general ward settings.

Data Collection:

Four timestamps will be extracted from the electronic health record (EHR): swab request, laboratory check-in, final laboratory result, and change in isolation logo. These will allow computation of operational intervals (request → action), collection delay, processing delay, and action delay.

Statistical Analysis:

Continuous variables will be summarized as medians and interquartile ranges. Median time differences between pre- and post-intervention periods will be compared using mixed-effects linear regression adjusted for immunosuppression, ICU admission, day of the week, and public holidays. Analyses will be conducted using Stata v16.

Ethical Considerations:

The study is retrospective and minimal-risk, involving only secondary use of clinical data. It has been submitted to the CEPI (Comité de Ética de Protocolos de Investigación), Hospital Italiano de Buenos Aires (PRIISA 15728), with waiver of informed consent under CIOMS 2019 Guideline 10.

Expected Impact:

By quantifying real-time process improvements after PCR implementation, this study will provide evidence on diagnostic turnaround times and operational efficiency in infection control practices.

Being tested
Rapid PCR-based algorithm for CPE detection
Keywords
Healthcare-Associated Infections, Antimicrobial Resistance, Enterobacteriaceae Infections, Nosocomial Colonization, Infection Control
Medical subject headings
Cross Infection, Enterobacteriaceae Infections

What participants receive

What participants receive. In a randomised study each person is assigned to one group by chance.

  • Rapid PCR-based algorithm for CPE detectionDiagnostic test

    Also called Rapid molecular diagnostic algorithm for CPE; BD MAX CPE PCR workflow

    Implementation of a rapid real-time PCR-based diagnostic algorithm for the detection of carbapenemase-producing Enterobacterales (CPE) integrated into the institutional infection control workflow. The BD MAX™ System detects bla_KPC, bla_NDM, bla_VIM/IMP, and bla_OXA-48-like genes from rectal swabs. The infection control team manages the process from sample request to result-based isolation decision. The intervention began on November 6, 2024, upon availability of PCR supplies and reagents.

Study groups in NCT07397416
Study groupRoleWhat they receive
Pre-intervention periodNo interventionThe baseline phase preceding the implementation of the rapid PCR-based algorithm. During this period, the institutional workflow for carbapenemase-producing Enterobacterales (CPE) surveillance and isolation reevaluation relied exclusively on culture-based methods. Patients evaluated for CPE carriage or decolonization were tested using CHROMagar™ KPC and phenotypic confirmation methods (including MALDI-TOF and NG-Test CARBA 5 when indicated). Discontinuation of isolation required either three negative cultures or two negative cultures plus one PCR performed at least three months after the last positive result. No modification of staffing, alert systems, or isolation criteria occurred during this period.
Post-intervention periodActive comparatorThe implementation phase beginning November 6, 2024, when the rapid PCR-based diagnostic algorithm for carbapenemase-producing Enterobacterales (CPE) was incorporated into the existing infection control workflow. Real-time PCR was performed using the BD MAX™ System to detect bla_KPC, bla_NDM, bla_VIM/IMP, and bla_OXA-48-like genes directly from rectal swabs. The infection control team coordinated sample requests, result communication, and isolation/de-isolation actions. The new algorithm prioritized PCR testing for surveillance and discontinuation of isolation in patients not receiving antibiotics, replacing culture-based testing in those scenarios.
Receives: Diagnostic Test: Rapid PCR-based algorithm for CPE detection

What is being measured

The primary outcome is the main question the study is designed to answer.

  1. Time from surveillance swab request to isolation implementation or discontinuation (hours)

    Primary Outcome Measure

    1. Operational time from surveillance swab request to isolation status change (hours)

    Description:

    Time elapsed between the electronic request for perianal surveillance swab (clinical suspicion) and the implementation or discontinuation of the carbapenemase-producing Enterobacterales (EPC) isolation logo in the electronic health record (EHR).

    Unit of Measure: Hours

    Measured: From the date and time of electronic request for perianal swab collection until the date and time of isolation status update in the EHR, assessed up to 168 hours (7 days).

Secondary outcomes (3)
  1. Sample collection delay (hours)

    Description:

    Time elapsed between the electronic request for perianal surveillance swab and laboratory check-in of the sample.

    Unit of Measure: Hours

    Measured: From the date and time of electronic request for perianal swab collection until laboratory check-in of the sample, assessed up to 72 hours.

  2. Laboratory processing delay (hours)

    Time elapsed between laboratory check-in of the perianal swab sample and availability of the final laboratory result.

    Unit of Measure: Hours

    Measured: From the date and time of laboratory check-in until the date and time of final laboratory result, assessed up to 96 hours.

  3. Action delay after laboratory result (hours)

    Time elapsed between availability of the final laboratory result and update of the EPC isolation status (logo) in the electronic health record.

    Unit of Measure: Hours

    Measured: From the date and time of final laboratory result until the date and time of isolation status update in the EHR, assessed up to 72 hours.

Timeline

From the start of the study to its completion; the mark is today. Estimated dates are the sponsor’s plan.

  1. First posted9 Feb 2026
  2. Study start1 Mar 2026 (estimated)
  3. Primary completion1 Apr 2026 (estimated)
  4. Study completion1 May 2026 (estimated)

Resources

More details

For doctors and researchers: how the study is designed, who runs it, and its registry IDs.

Study design
Study type
Interventional
Phase
Phase N/A
Primary purpose
Diagnosis
Allocation
Non-randomised
Intervention model
Sequential
Model description
This study follows a sequential, before-after interventional design. The same hospital population and inclusion criteria are applied in two consecutive periods: * Pre-intervention period: standard culture-based algorithm for carbapenemase-producing Enterobacterales (CPE) surveillance and isolation reevaluation. * Post-intervention period: implementation of a rapid PCR-based algorithm (BD MAX™ System) for CPE detection integrated into the same workflow. No randomization or masking is performed. The comparison evaluates real-life time differences in isolation and de-isolation processes before and after PCR implementation.
Masking
None (open label)
Enrolment
800 participants (estimated)
IDs, dates and publications
ClinicalTrials.gov ID
NCT07397416
Sponsor's protocol ID
CEPI No. 7443 PRIISA 15728
Status last verified
Feb 2026
First submitted
22 Dec 2025
Last updated
9 Feb 2026
Results posted
No
Data monitoring committee
No
FDA-regulated drug
No
FDA-regulated device
No
Individual data sharing
No: Data derived from institutional electronic health records cannot be shared externally due to confidentiality agreements and national data protection laws (Law 25.326, Argentina). Aggregated results will be available upon publication.

Publications

  • van Duin D, Doi Y. The global epidemiology of carbapenemase-producing Enterobacteriaceae. Virulence. 2017 May 19;8(4):460-469. doi: 10.1080/21505594.2016.1222343. Epub 2016 Aug 11.

    PubMed 27593176
  • Orena BS, Liporace MF, Teri A, Girelli D, Salari F, Mutti M, Giordano G, Alteri C, Gentiloni Silverj F, Matinato C, Callegaro A, Cariani L. Active Surveillance of Patients Colonized with CRE: A Single-Center Study Based on a Combined Molecular/Culture Protocol. Antibiotics (Basel). 2024 Nov 6;13(11):1053. doi: 10.3390/antibiotics13111053.

    PubMed 39596746
  • Lim C, Ashley EA, Hamers RL, Turner P, Kesteman T, Akech S, Corso A, Mayxay M, Okeke IN, Limmathurotsakul D, van Doorn HR. Surveillance strategies using routine microbiology for antimicrobial resistance in low- and middle-income countries. Clin Microbiol Infect. 2021 Oct;27(10):1391-1399. doi: 10.1016/j.cmi.2021.05.037. Epub 2021 Jun 7.

    PubMed 34111583
  • Knight GM, Dyakova E, Mookerjee S, Davies F, Brannigan ET, Otter JA, Holmes AH. Fast and expensive (PCR) or cheap and slow (culture)? A mathematical modelling study to explore screening for carbapenem resistance in UK hospitals. BMC Med. 2018 Aug 16;16(1):141. doi: 10.1186/s12916-018-1117-4.

    PubMed 30111322
  • A C, N C, A S, A P, E Y, F G, M C. Validation of a rapid molecular detection test for gram-negative multidrug-resistant bacteria in rectal swabs upon admission of patients to the intensive care unit. Diagn Microbiol Infect Dis. 2024 Jun;109(2):116250. doi: 10.1016/j.diagmicrobio.2024.116250. Epub 2024 Mar 8.

    PubMed 38479092
  • Fasciana T, Antonelli A, Bianco G, Lombardo D, Codda G, Roscetto E, Perez M, Lipari D, Arrigo I, Galia E, Tricoli MR, Calvo M, Niccolai C, Morecchiato F, Errico G, Stefani S, Cavallo R, Marchese A, Catania MR, Ambretti S, Rossolini GM, Pantosti A, Palamara AT, Sabbatucci M, Serra N, Giammanco A. [The CCM Project "Phenotypic and molecular screening methodologies for the detection of coloniza-tions due to carbapenem-resistant Enterobacterales (CRE)"]. Epidemiol Prev. 2024 Nov-Dec;48(6):470-475. doi: 10.19191/EP24.6.A806.137. Italian.

    PubMed 39679488
  • Lydeamore MJ, Wu D, Donker T, Gorrie C, Higgs CK, Easton M, Hennessy D, Geard N, Howden BP, Cooper BS, Wilson A, Peleg AY, Stewardson AJ. Changes in isolation guidelines for CPE patients results in only mild reduction in required hospital beds. Infect Dis Health. 2025 May;30(2):128-131. doi: 10.1016/j.idh.2024.10.004. Epub 2024 Nov 24.

    PubMed 39586760
  • Jimenez A, Fennie K, Munoz-Price LS, Ibrahimou B, Pekovic V, Abbo LM, Martinez O, Rosello G, Sposato K, Doi Y, Trepka MJ. Duration of carbapenemase-producing Enterobacteriales carriage among ICU patients in Miami, FL: A retrospective cohort study. Am J Infect Control. 2021 Oct;49(10):1281-1286. doi: 10.1016/j.ajic.2021.06.006. Epub 2021 Jun 17.

    PubMed 34146625
  • Zimmerman FS, Assous MV, Bdolah-Abram T, Lachish T, Yinnon AM, Wiener-Well Y. Duration of carriage of carbapenem-resistant Enterobacteriaceae following hospital discharge. Am J Infect Control. 2013 Mar;41(3):190-4. doi: 10.1016/j.ajic.2012.09.020.

    PubMed 23449280
  • van Veen A, de Goeij I, Damen M, Huijskens EGW, Paltansing S, van Rijn M, Bentvelsen RG, Veenemans J, van der Linden M, Vos MC, Severin JA; Infection Prevention and Antimicrobial Resistance Care Network South-western Netherlands. Regional variation in the interpretation of contact precautions for multi-drug-resistant Gram-negative bacteria: a cross-sectional survey. J Hosp Infect. 2024 Oct;152:1-12. doi: 10.1016/j.jhin.2024.06.020. Epub 2024 Jul 26.

    PubMed 39069006

Questions about this trial

What is this clinical trial studying?

A study testing Rapid PCR-based algorithm for CPE detection in people with Carbapenemase-Producing Enterobacterales (CPE) Colonization, run by Hospital Italiano de Buenos Aires.

The full registered description is in the About this study section and the official record.

Who may be eligible to take part?

The sponsor lists 14 inclusion and 3 exclusion criteria. Eligibility is decided by the study team after screening, so read the full criteria and contact a listed site.

Is this clinical trial currently recruiting?

The record says: opening soon, as of the sponsor's last update on 9 Feb 2026. Status can change between updates, so confirm with the study contact before making plans.

What are the possible benefits and risks?

They depend on the study and the treatment, and no study can promise a benefit. The study team explains the known risks during informed consent, before anyone joins; the record itself does not list them.

Are results available for this study?

This study is still under way. Results are not available in the source record yet.

How can a doctor refer a patient or contact the research team?

Contact Emilio Felipe Huaier Arriazu, MD (+549 011 49590200 ext. 8165 / 9542, emilio.huaier@hospitalitaliano.org.ar), or a site near the patient. AzTrials does not enrol participants or take referrals.

What does the primary outcome measure?

Time from surveillance swab request to isolation implementation or discontinuation (hours) (time frame: From the date and time of electronic request for perianal swab collection until the date and time of isolation status update in the EHR, assessed up to 168 hours (7 days).). It is what the study was designed to measure, not a finding.

Where can I read the original study information?

On the ClinicalTrials.gov record for NCT07397416, which also lists 10 linked publications.

Does a listing mean the treatment is approved or proven to work?

No. A listing means the study is registered. It does not show that the treatment is safe, works, or is approved by a regulator.

How often is this information updated?

AzTrials copies changed records from ClinicalTrials.gov every night and reloads the whole registry every week. The sponsor last updated this record on 9 Feb 2026; AzTrials last refreshed its copy on 29 Oct 2026.

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